PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG354500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 656aa    MW: 70696 Da    PI: 6.7019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG354500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12480525454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Pavir.9KG354500.1.p 480 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 525
                          799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4257209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39476525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.50E-14479529No hitNo description
SuperFamilySSF474592.09E-18479547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-18480547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10480525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16482531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MNLWTDDNAS MMEAFMASAD LPAFPWAGAS SAAATPPPPP PQAPPAMMAP GFNQDTLQQR  60
LQAMIEGSRE TWTYAIFWQS SVDAATGASL LGWGDGYYKG CDDDKRKQRP LTPAAQAEQE  120
HRKRVLRELN SLISGAAAAP DEAVEEEVTD TEWFFLVSMT QSFLNGSGLP GQALFAGQPT  180
WIASGLSAAP CERARQAYNF GLRTMVCVPP PAQQQQPAPG ADQAETDPSV LWLADPVMDI  240
KESLSHHPSA EISVTKPPPP PPQIHFENGS TSTLTENPSP SVHAPPPPPA PPQRQHPQNQ  300
GPFRRELNFS DFASNPSMAA APPFFKPESG EILSFGADSN SRRNPSPAPP AATASLTTAP  360
GSLFSQHTAT LTAAAANDAK NNSNNNNNKR SMEATSRASN TNHHPAATAN EGMLSFSSAP  420
TTRPSTGTGT PAKSESDHSD LDASVREVES SRVVAPPPEA EKRPRKRGRK PANGREEPLN  480
HVEAERQRRE KLNQRFYALR AVVPNVSKMD KASLLGDAIS YINELRGKLT ALESDKDTLH  540
AQIEALKKER DARPAPHAAG HDAGPRCHAV EIDAKILGLE AMIRVQCHKR NHPSARLMTA  600
LRELDLDVYH ASVSVVKDLM IQQVAVKMAS RVYSQEQLNA ALYSRLAEPG TAMGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A5e-565221043204Transcription factor MYC3
4ywc_A5e-565221043204Transcription factor MYC3
4ywc_B5e-565221043204Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461469KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.2920.0callus| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0611070.0AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698381.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor MYC4-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLK4AM380.0K4AM38_SETIT; Uncharacterized protein
STRINGSi039973m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-64bHLH family protein